docs(architecture): untangle TLS identity use cases, remove phase framing, add ADR-013 Rust canonical + agent crate

- Rewrite OQ-12: separate two distinct TLS identity use cases (RFC 7250
  raw keys as default for P2P, X.509 for domain-hosted/browsers) instead
  of conflating them as 'file paths now, ACME later'. ACME is a proven
  pattern from the reverse-proxy project, not speculative future work.

- Resolve OQ-13 and OQ-14: remove 'Phase 1' framing from core crate
  specs. /{service}/{op} is the correct design for alknet-call, not a
  simplification. Batch as correlated call.requested events is the correct
  protocol design. Core crates need to be done right from the start.

- Add ADR-013: Rust as canonical implementation language. TypeScript
  @alkdev/operations is a reference that informed the design, not a
  parallel implementation. The only JS use case is browser SDK adaptation.
  Five reasons: memory safety, LLM competence, supply chain attacks,
  performance, browser-only JS.

- Add alknet-agent crate to the crate graph (depends on alknet-call, not
  alknet-core). Agent service uses call protocol client for tool dispatch
  and vault/derive for provider keys — no env vars for secrets. ALPN
  alknet/agent added to the registry.

- Add OQ-15: call protocol client and adapter contract. alknet-call needs
  both server (CallAdapter) and client (remote invocation over QUIC), plus
  the adapter traits (from_*, to_*) that enable composition.

- Clarify alknet-napi as thin NAPI projection layer, not business logic.

- Fix bugs: ProtocolController → ProtocolHandler typo, OperationEnv
  invoke() path format inconsistency, RateLimitConfig comment confusion.

- Update endpoint.md TLS section: comprehensive identity model comparison
  table, RFC 7250 as default mode, ACME as proven pattern.
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# ADR-013: Rust as Canonical Implementation Language
## Status
Accepted
## Context
alknet's core crates (alknet-core, alknet-call, alknet-vault) and all handler crates are implemented in Rust. A previous TypeScript implementation (`@alkdev/operations`, `@alkdev/pubsub`) informed the design of the call protocol — its operation registry, EventEnvelope framing, adapter patterns (from_openapi, from_mcp, from_call), and bidirectional composition.
The question is: what is the relationship between the TypeScript implementation and the Rust implementation? Is TypeScript a parallel implementation that must be maintained in lockstep, or is Rust the canonical implementation with TypeScript serving a specific role?
Five factors make Rust the canonical choice:
1. **Memory safety eliminates an entire vulnerability class.** Rust's ownership model prevents buffer overflows, use-after-free, and other memory corruption bugs that are endemic in C/C++ and impossible to audit away in JavaScript runtimes.
2. **LLM code generation quality is comparable across Rust and TypeScript.** Agents "grok" both languages roughly equally, so there is no productivity argument for TypeScript.
3. **NPM supply chain attacks are growing rapidly.** The JavaScript ecosystem's dependency density makes supply chain attacks a persistent and increasing risk. NPM is dropping features like post-install scripts in response. This trend makes JavaScript an unreliable foundation for security-critical infrastructure.
4. **Rust is significantly faster.** For networking, encryption, and protocol handling, the performance difference is material — not marginal.
5. **The only legitimate JavaScript use case is the browser.** WASM/WebTransport clients need a JavaScript SDK, and the existing `@alkdev/operations` TypeScript code can be adapted for browser use cases where users want to expose operations to web applications. This is a consumer SDK, not a parallel implementation.
## Decision
**Rust is the canonical implementation language.** All alknet crates are implemented in Rust. The TypeScript `@alkdev/operations` and `@alkdev/pubsub` libraries are reference implementations that informed the design; they are not maintained as parallel implementations.
The relationship between the TypeScript and Rust implementations:
| Aspect | Rust (canonical) | TypeScript (reference/browser) |
|--------|-----------------|-------------------------------|
| OperationSpec, OperationRegistry | alknet-call owns canonical types | `@alkdev/operations` projects canonical types into TS |
| Wire protocol (EventEnvelope) | alknet-call owns canonical framing | `@alkdev/pubsub` implements the same wire format for browser |
| Adapter patterns (from_*, to_*) | alknet-call defines adapter traits and Rust implementations | Browser-adapted implementations where needed |
| Call protocol client | alknet-call (QUIC) | alknet-napi (QUIC via NAPI) or browser SDK (WebTransport) |
| LLM provider integration | alknet-agent (forked aisdk, simplified) | Not applicable |
| Provider key management | alknet-vault via call protocol (no env vars) | Not applicable |
**The adapter contract (from_openapi, from_mcp, from_call, to_openapi, to_mcp) lives in Rust.** These patterns convert external specifications or protocols into `OperationSpec + Handler` pairs that register in the local `OperationRegistry`. The TypeScript implementations serve as reference for browser adaptations, not as the source of truth.
**alknet-napi is a thin projection layer.** It exposes the Rust call protocol client to Node.js via NAPI. It does not contain business logic or adapter implementations. TypeScript consumers who want to use alknet from Node.js use alknet-napi to access the Rust implementation.
**The browser SDK is a future adaptation.** When WASM/WebTransport support is needed, the existing TypeScript code can be adapted to run in browsers, speaking the same EventEnvelope wire format over WebTransport streams. This preserves the WASM door (ADR-009) without requiring Rust-to-WASM compilation of the full stack.
## Consequences
**Positive:**
- Single implementation to maintain, test, and secure
- Memory safety eliminates a whole class of vulnerabilities
- Provider key management through alknet-vault (call protocol) instead of env vars
- No NPM dependency chain for security-critical infrastructure
- The existing TypeScript code informs the Rust design — its patterns are preserved, not its implementation
- Browser clients get a thin, adapted SDK rather than the full operations library
**Negative:**
- Browser support requires a separate JavaScript SDK (adapted from existing TS code) rather than a shared implementation
- Contributors who only know JavaScript cannot contribute to core alknet crates
- The `@alkdev/operations` TypeScript library may drift from the canonical Rust types if not kept in sync during the transition period
**Risks mitigated:**
- WASM door preserved: The `@alkdev/operations` TypeScript code can be adapted for browser use without recompiling Rust to WASM. The wire format is JSON, which any runtime can produce and consume.
- NAPI consumers: alknet-napi provides the call protocol client to Node.js without reimplementing in JavaScript.
## References
- ADR-003: Crate decomposition
- ADR-005: irpc as call protocol foundation
- ADR-009: One-way door decision framework (WASM door)
- Reference TypeScript implementation: `/workspace/@alkdev/operations`
- Reference TypeScript pubsub: `/workspace/@alkdev/pubsub`
- aisdk (Rust port to be forked): `/workspace/aisdk`