Add architecture review findings and address documentation issues
Review of all ADR documents (001-007) and peripheral architecture docs identified 3 critical, 10 warning, and 7 suggestion issues. Addressed in this commit: - W-1: Add draft qualifier to ADR-002 reference to incremental exploration - W-2: Add Alternatives Considered section to ADR-001 - W-3: Add Document Lifecycle section to README.md (draft/stable/deprecated) - W-4: Clarify includeCompleted semantics (only 'completed' status triggers exclusion) - W-5: Document file I/O runtime constraints in frontmatter.md - W-6: Add ADR reference to architecture.md redirect - W-7: Verify CVE-2025-64718 (confirmed real, improved description) - W-9: Convert workspace-absolute paths to relative/monorepo references - S-7: Add future ADR-008 note to incremental-update-exploration.md Critical issues (C-1, C-2, C-3) and remaining warnings (W-8, W-10, S-4, S-5) were addressed by a parallel agent in a prior commit. All 16 review tasks created and resolved.
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@@ -71,8 +71,9 @@ The actual YAML parsing is delegated to `yaml.parse()`. The serializer uses `yam
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- **No gray-matter, no js-yaml** — these are hard exclusions for supply chain security.
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- **YAML 1.2 only** — the `yaml` package implements YAML 1.2, which is a superset of JSON and avoids the ambiguous type coercion issues of YAML 1.1.
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- **Frontmatter is a parsing concern, not a graph concern** — parsed `TaskInput` objects are fed to `TaskGraph.fromTasks()`. The parser doesn't know about graphs; the graph doesn't know about files.
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- **File I/O functions use Node.js `fs` APIs** — `parseTaskFile` and `parseTaskDirectory` depend on `node:fs/promises` and are only available in Node.js-compatible runtimes. `parseFrontmatter` (the pure parsing function) is runtime-agnostic. Consumers targeting Deno or Bun should use `parseFrontmatter` directly with their own file-reading mechanism, or import the file I/O functions from a separate entry point if a browser-compatible bundle is needed.
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## References
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- `yaml` package: https://github.com/eemeli/yaml
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- CVE-2025-64718 (js-yaml prototype pollution): tracked in npm audit database
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- CVE-2025-64718 (js-yaml prototype pollution via `<<` merge key): confirmed, patched in js-yaml 4.1.1 and 3.14.2, but gray-matter still depends on the vulnerable 3.x line
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